From dmesg below, it seems this "broken device, retraining non-functional 
downstream link at 2.5GT/s" is related due to the message of " pci 
0000:4c:00.0: 32.000 Gb/s available PCIe bandwidth, limited by 2.5 GT/s PCIe 
x16 link at 0000:4b:02.0 (capable of 504.112 Gb/s with 32.0 GT/s PCIe x16 link)
"
[  296.128486] mlx5_core 0000:4c:00.0: E-Switch: Unload vfs: mode(LEGACY), 
nvfs(0), necvfs(0), active vports(0)
[  296.163512] mlx5_core 0000:4c:00.0: E-Switch: Disable: mode(LEGACY), 
nvfs(0), necvfs(0), active vports(0)
[  297.099419] mlx5_core 0000:4c:00.0: E-Switch: Disable: mode(LEGACY), 
nvfs(0), necvfs(0), active vports(0)
[  297.099456] mlx5_core 0000:4c:00.0: mlx5_wait_for_pages:916:(pid 6105): 
Skipping wait for vf pages stage
[  297.099463] mlx5_core 0000:4c:00.0: mlx5_wait_for_pages:916:(pid 6105): 
Skipping wait for vf pages stage
[  299.137166] mlx5_core 0000:4c:00.0: E-Switch: cleanup
[  344.072271] pcieport 0000:4b:02.0: pciehp: Slot(7): Link Down
[  344.072287] pcieport 0000:4b:02.0: pciehp: Slot(7): Card not present
[  344.072936] {1}[Hardware Error]: Hardware error from APEI Generic Hardware 
Error Source: 0
[  344.072945] {1}[Hardware Error]: It has been corrected by h/w and requires 
no further action
[  344.072950] {1}[Hardware Error]: event severity: corrected
[  344.072955] {1}[Hardware Error]:  Error 0, type: corrected
[  344.072959] {1}[Hardware Error]:   section_type: PCIe error
[  344.072962] {1}[Hardware Error]:   port_type: 4, root port
[  344.072967] {1}[Hardware Error]:   version: 3.0
[  344.072969] {1}[Hardware Error]:   command: 0x0547, status: 0x0010
[  344.072974] {1}[Hardware Error]:   device_id: 0000:4b:02.0
[  344.072976] {1}[Hardware Error]:   slot: 7
[  344.072978] {1}[Hardware Error]:   secondary_bus: 0x4c
[  344.072980] {1}[Hardware Error]:   vendor_id: 0x8086, device_id: 0x0db0
[  344.072982] {1}[Hardware Error]:   class_code: 060400
[  344.072985] {1}[Hardware Error]:   bridge: secondary_status: 0x2000, 
control: 0x0003
[  344.073060] pcieport 0000:4b:02.0: AER: aer_status: 0x00000001, aer_mask: 
0x00002000
[  344.073073] pcieport 0000:4b:02.0:    [ 0] RxErr                  (First)
[  344.073076] pcieport 0000:4b:02.0: AER: aer_layer=Physical Layer, 
aer_agent=Receiver ID
[  378.664715] pcieport 0000:4b:02.0: pciehp: Slot(7): Card present
[  379.699411] pcieport 0000:4b:02.0: broken device, retraining non-functional 
downstream link at 2.5GT/s
[  380.347436] pcieport 0000:4b:02.0: pciehp: Slot(7): No link
[  380.347475] pcieport 0000:4b:02.0: pciehp: Slot(7): Card present
[  380.347480] pcieport 0000:4b:02.0: pciehp: Slot(7): Link Up
[  380.483696] pci 0000:4c:00.0: [15b3:1021] type 00 class 0x020000
[  380.484000] pci 0000:4c:00.0: reg 0x10: [mem 0x00000000-0x01ffffff 64bit 
pref]
[  380.484456] pci 0000:4c:00.0: reg 0x30: [mem 0x00000000-0x000fffff pref]
[  380.484565] pci 0000:4c:00.0: Max Payload Size set to 512 (was 128, max 512)
[  380.486227] pci 0000:4c:00.0: PME# supported from D3cold
[  380.486704] pci 0000:4c:00.0: reg 0x1a4: [mem 0x00000000-0x001fffff 64bit 
pref]
[  380.486711] pci 0000:4c:00.0: VF(n) BAR0 space: [mem 0x00000000-0x01ffffff 
64bit pref] (contains BAR0 for 16 VFs)
[  380.489300] pci 0000:4c:00.0: 32.000 Gb/s available PCIe bandwidth, limited 
by 2.5 GT/s PCIe x16 link at 0000:4b:02.0 (capable of 504.112 Gb/s with 32.0 
GT/s PCIe x16 link)


** Bug watch added: Linux Kernel Bug Tracker #218765
   https://bugzilla.kernel.org/show_bug.cgi?id=218765

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https://bugs.launchpad.net/bugs/2085103

Title:
  pci hot plug get "retraining non-functional downstream link at
  2.5GT/s]"

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