Public bug reported: Several R packages are depending on rmatrix >= 1.3.2, while Ubuntu Hirsute is shipping rmatrix 1.3-2+really1.2-18-0ubuntu1
Autopkgtests for the following packages fail with: "namespace ‘Matrix’ 1.2-18 is already loaded, but >= 1.3.2 is required" r-bioc-delayedarray, r-bioc-matrixgenerics, r-cran-matrixstats, r-bioc- beachmat, r-bioc-summarizedexperiment, r-bioc-hdf5array, ... We need to upgrade rmatrix to 1.3.2 to make the packages migrate, but this has a problem with s390x and is being worked on here: https://github.com/glmmTMB/glmmTMB/issues/665 ** Affects: r-bioc-beachmat (Ubuntu) Importance: Undecided Status: New ** Affects: r-bioc-delayedarray (Ubuntu) Importance: Undecided Status: New ** Affects: r-bioc-hdf5array (Ubuntu) Importance: Undecided Status: New ** Affects: r-bioc-iranges (Ubuntu) Importance: Undecided Status: New ** Affects: r-bioc-matrixgenerics (Ubuntu) Importance: Undecided Status: New ** Affects: r-bioc-rhdf5lib (Ubuntu) Importance: Undecided Status: New ** Affects: r-bioc-s4vectors (Ubuntu) Importance: Undecided Status: New ** Affects: r-bioc-summarizedexperiment (Ubuntu) Importance: Undecided Status: New ** Affects: r-cran-matrixstats (Ubuntu) Importance: Undecided Status: New ** Affects: rmatrix (Ubuntu) Importance: Undecided Status: New ** Affects: rmatrix (Debian) Importance: Unknown Status: Unknown ** Tags: update-excuse ** Bug watch added: Debian Bug tracker #980809 https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=980809 ** Also affects: rmatrix (Debian) via https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=980809 Importance: Unknown Status: Unknown ** Description changed: Several R packages are depending on rmatrix >= 1.3.2, while Ubuntu Hirsute is shipping rmatrix 1.3-2+really1.2-18-0ubuntu1 - Autopkgtests for the following packages fail with: "namespace ‘Matrix’ 1.2-18 is already loaded, but >= 1.3.2 is required" r-bioc-delayedarray, r-bioc-matrixgenerics, r-cran-matrixstats, r-bioc- beachmat, r-bioc-summarizedexperiment, r-bioc-hdf5array, ... + + Upstream bug report: https://github.com/glmmTMB/glmmTMB/issues/665 ** Also affects: r-bioc-delayedarray (Ubuntu) Importance: Undecided Status: New ** Also affects: r-bioc-matrixgenerics (Ubuntu) Importance: Undecided Status: New ** Also affects: r-bioc-hdf5array (Ubuntu) Importance: Undecided Status: New ** Also affects: r-bioc-s4vectors (Ubuntu) Importance: Undecided Status: New ** Also affects: r-bioc-rhdf5lib (Ubuntu) Importance: Undecided Status: New ** Also affects: r-cran-matrixstats (Ubuntu) Importance: Undecided Status: New ** Also affects: r-bioc-beachmat (Ubuntu) Importance: Undecided Status: New ** Description changed: Several R packages are depending on rmatrix >= 1.3.2, while Ubuntu Hirsute is shipping rmatrix 1.3-2+really1.2-18-0ubuntu1 Autopkgtests for the following packages fail with: "namespace ‘Matrix’ 1.2-18 is already loaded, but >= 1.3.2 is required" r-bioc-delayedarray, r-bioc-matrixgenerics, r-cran-matrixstats, r-bioc- beachmat, r-bioc-summarizedexperiment, r-bioc-hdf5array, ... - Upstream bug report: https://github.com/glmmTMB/glmmTMB/issues/665 + + We need to upgrade rmatrix to 1.3.2 to make the packages migrate, but this has a problem with s390x and is being worked on here: https://github.com/glmmTMB/glmmTMB/issues/665 ** Also affects: r-bioc-summarizedexperiment (Ubuntu) Importance: Undecided Status: New ** Also affects: r-bioc-iranges (Ubuntu) Importance: Undecided Status: New -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1915926 Title: Make R packages migrate To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-bioc-beachmat/+bug/1915926/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
