Is "cannot" a matter of being contrary to policy, or does including such
references break the repository to the point where installations will
fail?

I would agree that code-wise this is an issue with java-package,
however, the work required to bring java-package into line is several
orders of magnitude greater.  The sun-java6-jre package (IIRC) involves
downloading the binary from Sun after the dummy package is installed, so
_inclusion_ of the packages in repositories is not an option.  The two
methods currently use conflicting numbering schemes - java-package
generates 1.6.x version numbers, while the Ubuntu dummies are numbered
6.0.x.  Because of the differences, an "upgrade" from one to the other
will cause problems, so a new package name will need to be devised - I
am guessing that this in itself is a scary process.  Notwithstanding the
package naming issues, I will file this against java-package too.  I
would attempt a fix myself, but last time I read those scripts my head
exploded.

FWIW, I believe I may have successfully run 2.5 (or was it 2.4?) under
gij/gcj, but this was long enough ago that I can't reliably recall.
Will test this at a later date.

Any alternative solutions in the interim (short of evil --force options)
that would allow the upgrade?

-- 
Missing dependency on java2-runtime et al.
https://bugs.launchpad.net/bugs/174198
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