I am having the same problem. A few days ago I upgraded my computer from Ubuntu 
19.10 to 20.04. Normally I was starting the MySql server manually. It started 
working automatically with the update.
When I put the computer to sleep mode and turn it back on, the authentication 
window for the MySql server is opening at the upper left corner and is not 
closing in any way.
The thing that catches my attention here is that when I click on the window 
that does not close, the application under the window detects the click. 
However, the cancel button and the password text box is not performing their 
functions even though they sense the clicks correctly.
Notice: Restarting the shell closes the window.

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https://bugs.launchpad.net/bugs/1824874

Title:
  undismissable, unclickable authentication dialog left on screen (top-
  left corner) after policykit authentication [pushModal: invocation of
  begin_modal failed]

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