Today I've marked bug 1732946 as a duplicate of this one but I'm tempted
to mark this as a duplicate of bug 42178 which was filed back in 2006
and has several duplicates. It seems that apt not respecting the locking
of files in synaptic and v.v. was an intentional change, see the first
few comments of that bug. So synaptic is working as designed.

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https://bugs.launchpad.net/bugs/1766161

Title:
  package get updated even though locked in Synaptic

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