I highly doubt that it has something to do with VT-x since both host and
guest are x64, and VirtualBox does not support x64 guests without VT-x.
Anyway, my CPU is i7-4510U.

There is an update for VirtualBox extension pack, I have not installed
it yet.

I tried one more time:
-> Clean install Xubuntu 16.04.
-> Full update.
No automatic guest display resolution based on window size (but it does scale 
once during boot), no clipboard sharing. xfce4-display-settings segfaults if 
the current resolution is not one that is listed (otherwise works fine), xrandr 
-s works fine.

-> Snapshot.
-> Instal virtualbox-guest-x11-hwe
-> Reboot
This installs virtualbox-guest-dkms-hwe as a dependency. This is how I 
installed it in the first place.
Guest display resolution scaling works fine, as does clipboard sharing.
Problems as described above. I attached an strace of users-admin.

-> Revert to snapshot
-> Install virtualbox-guest-source-hwe
No effect - it is indeed not build
-> Install virtualbox-guest-x11-hwe and reboot (virtualbox-guest-dkms-hwe is 
not installed this time)
All kinds of errors in popups that VBoxClient can't access the kernel 
(ERR_ACCESS_DENIED)

Somehow I got it working last time, and I swear I saw the kernel module being 
build from apt.
I went back to the working machine and found indeed that 
virtualbox-guest-utils-hwe and virtualbox-guest-source-hwe are installed but 
virtualbox-guest-dkms-hwe not, but auto guest scaling and clipboard sharing 
does not work, so you're right about the source package doing nothing (except 
that it allows virtualbox-guest-x11-hwe to be installed without the dkms 
package).

I am unable to download the old binaries from the link you provided. The
link "Binaries build by this source" just link to the latest. However, I
am 100% sure it worked with the previous one since I heavily use zenity
in my application so I was very surprised that my application didn't do
anything any more after an update.

** Attachment added: "users-admin"
   
https://bugs.launchpad.net/ubuntu/+source/virtualbox-hwe/+bug/1760063/+attachment/5126396/+files/users-admin

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https://bugs.launchpad.net/bugs/1760063

Title:
  Many tools don't start after upgrade of virtualbox-hwe

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