But your GDM is still using Wayland, Right?

I had to edit /etc/gdm3/custom.conf and uncomment line:
WaylandEnable=false 

After that mouse worked in GDM greeter too.

I managed to reproduce this on another computer by using bionic-proposed main 
universe repository.
Maybe this is bug in gnome-session or related package.

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https://bugs.launchpad.net/bugs/1749878

Title:
  GDM doesn't accept mouse clicks

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