Could you please test the attached patch on Xenial either by rebuilding the 
package or by grabbing it from 
https://launchpad.net/~rbalint/+archive/ubuntu/scratch ?
It is expected to fix the communication between u-u and u-u-shutdown and make 
u-u-shutdown wait properly for u-u to finish.


** Patch added: "unattended-upgrades_0.90ubuntu0.7.patch"
   
https://bugs.launchpad.net/ubuntu/+source/unattended-upgrades/+bug/1690980/+attachment/4908156/+files/unattended-upgrades_0.90ubuntu0.7.patch

** Changed in: unattended-upgrades (Ubuntu)
       Status: In Progress => Incomplete

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https://bugs.launchpad.net/bugs/1690980

Title:
  unattended-upgrades does not block shutdown of system, as it is
  designed to

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