With the new kernel the system boots up.
I get the following:

$ dmesg | grep -i nvme
[    0.000000] Command line: BOOT_IMAGE=/boot/vmlinuz-4.12.0-rc6+ 
root=UUID=365f1a9c-9598-4ad5-a387-d02f771767a1 ro quiet splash 
nvme_core.dyndbg=+p vt.handoff=7
[    0.000000] Kernel command line: BOOT_IMAGE=/boot/vmlinuz-4.12.0-rc6+ 
root=UUID=365f1a9c-9598-4ad5-a387-d02f771767a1 ro quiet splash 
nvme_core.dyndbg=+p vt.handoff=7
[    2.228574] nvme nvme0: pci function 0000:04:00.0
[    2.444448] nvme 0000:04:00.0: NVME_QUIRK_NO_APST
[    2.444449] nvme 0000:04:00.0: disabling APST.
[    2.444451] nvme nvme0: Disable APST at first time
[    2.444452] nvme nvme0: APST disabled
[    2.446363]  nvme0n1: p1 p2
[    4.140319] EXT4-fs (nvme0n1p2): mounted filesystem with ordered data mode. 
Opts: (null)
[    4.358751] EXT4-fs (nvme0n1p2): re-mounted. Opts: errors=remount-ro

And indeed, this time APST is disabled!

$ sudo nvme get-feature -f 0x0c -H /dev/nvme0
get-feature:0xc (Autonomous Power State Transition), Current value:00000000
        Autonomous Power State Transition Enable (APSTE): Disabled

So whatever it was you changes works! I hope it will be in the standard kernel 
soon.
Thanks a lot for taking the time to look into this, in particular because I 
seem to be the only person affected by it. I appreciate it.

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https://bugs.launchpad.net/bugs/1699004

Title:
  APST gets enabled against explicit kernel option

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