Hi. The same problem here. Release 16.04.2 LTS, iptables 1.6.0-2ubuntu3
etc. I noticed this one in dmesg entry:

$ sudo dmesg |grep iptables
[ 1168.282586] nf_conntrack: automatic helper assignment is deprecated and it 
will be removed soon. Use the iptables CT target to attach helpers instead. 

I have one more problem with this release; when iptables is in use (with
very simple rules) there is not internet connection. But using ufw
firewall, everything seems to work OK.

Thanks.

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https://bugs.launchpad.net/bugs/1556419

Title:
   nf_conntrack: automatic helper assignment is deprecated

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