This is also happening to me. The wheel middle button of my Logitech
B110 stopped working a week ago or so (not the wheel/scroll). I think it
was after some packages upgrade, but I am not completely sure.

I upgraded to the latest stable kernel right now and the issue is still here. 
These are the kernel versions I had a minute ago and now:
- Linux trovit 4.6.0-040600-generic #201606100558 SMP Fri Jun 10 10:01:15 UTC 
2016 x86_64 x86_64 x86_64 GNU/Linux
- Linux trovit 4.9.0-040900-generic #201612111631 SMP Sun Dec 11 21:33:00 UTC 
2016 x86_64 x86_64 x86_64 GNU/Linux

Also I ran xev to see the middle button click (wheel) is not recognized.

Some help or workaround would be really apreciated, I can't survive without the 
paste feature the middle button provides :-)
Thank you in advance.

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https://bugs.launchpad.net/bugs/1581088

Title:
  Middle mouse (wheel-click) button stopped working after upgrade to
  16.04

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