This bug was fixed in the package checkinstall - 1.6.2-4ubuntu2

---------------
checkinstall (1.6.2-4ubuntu2) zesty; urgency=medium

  * 0012-fix-conffiles.patch: Fix bad pipe/redirect combo
    to enable conffiles generation (LP: #1304760)

 -- Brian Morton <rokclim...@gmail.com>  Tue, 13 Dec 2016 21:07:00 -0500

** Changed in: checkinstall (Ubuntu)
       Status: Confirmed => Fix Released

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https://bugs.launchpad.net/bugs/1304760

Title:
  checkinstall fails to add files to dpkg conffiles

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