Public bug reported:

After updating following packages system can't boot with secureboot
enabled:

shim from 0.9+1465500757.14a5905.is.0.8-0ubuntu3 to 
0.9+1474479173.6c180c6-0ubuntu1
grub-efi-amd64 from 2.02~beta2-36ubuntu11 to 2.02~beta2-36ubuntu11.1
grub-efi-amd64-signed from 1.74+2.02~beta2-36ubuntu11 to 
1.74.1+2.02~beta2-36ubuntu11.1
grub2-common from 2.02~beta2-36ubuntu11 to 2.02~beta2-36ubuntu11.1
grub-efi-amd64-bin from 2.02~beta2-36ubuntu11 to 2.02~beta2-36ubuntu11.1
grub-common from 2.02~beta2-36ubuntu11 to 2.02~beta2-36ubuntu11.1

Additionally when this update is performed shim-signed is uninstalled
(dependency not met). After manual changing package version requirements
in shim-signed package to met shim package dependency and install
modified shim-signed package system still not boot in secureboot. That
means the problem is in one of new version of these packages:

shim
grub-efi-amd64
grub-efi-amd64-signed
grub2-common
grub-efi-amd64-bin
grub-common

When I reverted changes to:

shim 0.9+1465500757.14a5905.is.0.8-0ubuntu3 
grub-efi-amd64 2.02~beta2-36ubuntu11 
grub-efi-amd64-signed 1.74+2.02~beta2-36ubuntu11 
grub2-common 2.02~beta2-36ubuntu11 
grub-efi-amd64-bin 2.02~beta2-36ubuntu11 
grub-common 2.02~beta2-36ubuntu11 
shim-signed 1.21.3+0.9+1465500757.14a5905.is.0.8-0ubuntu3

everything back to normal, system boot with secureboot enabled.

ProblemType: Bug
DistroRelease: Ubuntu 16.10
Package: shim 0.9+1465500757.14a5905.is.0.8-0ubuntu3
ProcVersionSignature: Ubuntu 4.8.0-27.29-lowlatency 4.8.1
Uname: Linux 4.8.0-27-lowlatency x86_64
ApportVersion: 2.20.3-0ubuntu8
Architecture: amd64
BootEFIContents:
 grub.cfg
 grubx64.efi
 MokManager.efi
 shim.efi
 shimx64.efi
CurrentDesktop: Unity
Date: Sun Nov  6 08:52:30 2016
Dependencies:
 
InstallationDate: Installed on 2015-02-13 (631 days ago)
InstallationMedia: Ubuntu 14.10 "Utopic Unicorn" - Release amd64 (20141022.1)
SourcePackage: shim
UpgradeStatus: Upgraded to yakkety on 2016-10-14 (22 days ago)

** Affects: grub2-signed (Ubuntu)
     Importance: Undecided
         Status: New

** Affects: shim (Ubuntu)
     Importance: Undecided
         Status: New

** Affects: shim-signed (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-bug yakkety

** Also affects: shim-signed (Ubuntu)
   Importance: Undecided
       Status: New

** Also affects: grub2-signed (Ubuntu)
   Importance: Undecided
       Status: New

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https://bugs.launchpad.net/bugs/1639546

Title:
  Problem with sigature verification

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