Public bug reported:
To reproduce, install the mpi4py package from Ubuntu. Enter
$ python
and then run:
>>> from mpi4py import MPI
An error message like the following is printed, and python exits:
**************************************************************************
[compy:04228] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_posix:
/usr/lib/openmpi/lib/openmpi/mca_shmem_posix.so: undefined symbol:
opal_shmem_base_framework (ignored)
[compy:04228] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_mmap:
/usr/lib/openmpi/lib/openmpi/mca_shmem_mmap.so: undefined symbol:
opal_show_help (ignored)
[compy:04228] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_sysv:
/usr/lib/openmpi/lib/openmpi/mca_shmem_sysv.so: undefined symbol:
opal_show_help (ignored)
--------------------------------------------------------------------------
It looks like opal_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during opal_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
opal_shmem_base_select failed
--> Returned value -1 instead of OPAL_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
opal_init failed
--> Returned value Error (-1) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
ompi_mpi_init: ompi_rte_init failed
--> Returned "Error" (-1) instead of "Success" (0)
--------------------------------------------------------------------------
*** An error occurred in MPI_Init_thread
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
*** and potentially your MPI job)
[compy:4228] Local abort before MPI_INIT completed successfully; not able to
aggregate error messages, and not able to guarantee that all other processes
were killed!
**************************************************************************
It appears to have something to do with how the mpi4py package was
built. The following is a work-around which involves removing the Ubuntu
package. First, remove it:
$ sudo apt-get remove mpi4py
Then install the Open MPI headers (the next step involves building
mpi4py) and pip:
$ sudo apt-get install libopenmpi-dev python-pip
Finally install mpi4py:
$ sudo pip install mpi4py
If you try the python command above, it should now work fine.
** Affects: mpi4py (Ubuntu)
Importance: Undecided
Status: New
** Description changed:
To reproduce, install the mpi4py package from Ubuntu. Enter
$ python
and then run:
>>> from mpi4py import MPI
An error message like the following is printed, and python exits:
-
******************************************************************************************
-
+ **************************************************************************
[compy:04228] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_posix:
/usr/lib/openmpi/lib/openmpi/mca_shmem_posix.so: undefined symbol:
opal_shmem_base_framework (ignored)
[compy:04228] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_mmap:
/usr/lib/openmpi/lib/openmpi/mca_shmem_mmap.so: undefined symbol:
opal_show_help (ignored)
[compy:04228] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_sysv:
/usr/lib/openmpi/lib/openmpi/mca_shmem_sysv.so: undefined symbol:
opal_show_help (ignored)
--------------------------------------------------------------------------
It looks like opal_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during opal_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
- opal_shmem_base_select failed
- --> Returned value -1 instead of OPAL_SUCCESS
+ opal_shmem_base_select failed
+ --> Returned value -1 instead of OPAL_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
- opal_init failed
- --> Returned value Error (-1) instead of ORTE_SUCCESS
+ opal_init failed
+ --> Returned value Error (-1) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
- ompi_mpi_init: ompi_rte_init failed
- --> Returned "Error" (-1) instead of "Success" (0)
+ ompi_mpi_init: ompi_rte_init failed
+ --> Returned "Error" (-1) instead of "Success" (0)
--------------------------------------------------------------------------
*** An error occurred in MPI_Init_thread
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
*** and potentially your MPI job)
[compy:4228] Local abort before MPI_INIT completed successfully; not able to
aggregate error messages, and not able to guarantee that all other processes
were killed!
-
******************************************************************************************
+ **************************************************************************
-
- It appears to have something to do with how the mpi4py package was built. The
following is a work-around which involves removing the Ubuntu package. First,
remove it:
+ It appears to have something to do with how the mpi4py package was
+ built. The following is a work-around which involves removing the Ubuntu
+ package. First, remove it:
$ sudo apt-get remove mpi4py
Then install the Open MPI headers (the next step involves building
mpi4py) and pip:
$ sudo apt-get install libopenmpi-dev python-pip
Finally install mpi4py:
$ sudo pip install mpi4py
If you try the python command above, it should now work fine.
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https://bugs.launchpad.net/bugs/1583432
Title:
Importing mpi4py crashes Python (2.7)
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