The Ubuntu (and Debian) tree for BIND includes a patch in 9.10 that
fixes this, and the bug has been filed upstream.

** Changed in: bind
       Status: New => Fix Committed

** Changed in: bind9 (Ubuntu)
     Assignee: (unassigned) => LaMont Jones (lamont)

** Changed in: bind
       Status: Fix Committed => Fix Released

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https://bugs.launchpad.net/bugs/1553176

Title:
  BIND ignores nanoseconds field in timestamps, fails to load newer
  versions of zones on reload

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