If you read https://wiki.ubuntu.com/Security/TrustStoreAndSessions
"From a lifetime perspective, the TPS ends whenever the TPP or its surface is 
dismissed. Similarly, if the session is terminated for any other reason, the 
TPP and its surface are dismissed, too. The app cannot exercise any sort of 
control in this scenario and is not even guaranteed to run.

Only after the trust session has ended, control is transferred back to
the app. More to this, while a TPS is active, focus mgmt. treats the
session as atomic and prevents the app from being refocused separately."

It seems that this could be impossible by design. However, it also seems
that the application remains active while the TPS is displayed, and only
switches to inactive when the TPS is closed (the app quickly switches
back to active, but I suppose this could be enough to break certain
things).

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https://bugs.launchpad.net/bugs/1483752

Title:
  Trusted prompts make application inactive: Qt.application.active ==
  false

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