Easy Peasy Solution
You need to set the appropriate option in the Compiz Place Windows
plugin.
Open CCSM (make sure you have it installed first).
Find the Place Windows plugin:
CSSM
Now, in the options, make sure that smart placement is selected.
Smarty
This option is usually set by default, but sometimes for some reason it
is not. I am not 100% certain as to the cause (still trying to find it).
If you do not have the place windows plugin, make sure to check that you
have any additional compiz plugins installed in the software centre.
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https://bugs.launchpad.net/bugs/1303462
Title:
[Regression] Window titlebars placed behind panel
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