Well, this is the normal behaviour. Its the same if you try to run a CLI
application by using sudo, the password asked is that of your root user.

Perhaps this wiki page will clarify it for you:

https://help.ubuntu.com/community/RootSudo

On the base of this, I'm marking this bug as invalid (its not a bug but
the normal behaviour). Please let us know if you disagree or you need
any other clarifications.

Thanks.

** Changed in: gksu (Ubuntu)
       Status: Incomplete => Invalid

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synaptic is asking root password and not user admin's
https://bugs.launchpad.net/bugs/133639
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