There seem to be another user on nvidia binary driver also with issues:
http://www.riverbankcomputing.com/pipermail/pyqt/2013-October/033379.html

And he got it working with nouveau driver.
http://www.riverbankcomputing.com/pipermail/pyqt/2013-November/033384.html

So the commonality might seem to be the nvidia binary driver.

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https://bugs.launchpad.net/bugs/1241988

Title:
  All pyqt5 quick examples fails with shader program link error

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