The following may be useful,

I also have this problem, at first a while ago when I was dual booting
ubuntu and win 7 using MBR boot, the same behaviour occurred, I resolved
by setting the boot flag (linux def) on the win 7 partition and
hibernation worked correctly.
I decided to go GPT/UEFI so that I could squeeze some more partitions
onto HDD and encountered the bug again described here, I thought I will
try setting the boot flag again (I know you're not meant too but nothing
to loose!) and this just resulted in windows hanging on the loading
windows when trying to boot without resuming.

Although unlikely it may point to a problem with windows bootloader
where for some reason it may be looking for that flag and in mbr its
fine to have it and it carries on, but with GPT it find it and carries
on but hangs because the flag is out of place in GPT.

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https://bugs.launchpad.net/bugs/1229886

Title:
  Grub2 cannot bring Win 7 out of hibernation - error 0xc000009a

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