I experienced this once on a fglrx machine, I have no problems with my Intel 
hardware.
I suspect it to be an issue with hardware rendered cursors not obeying xrandr 
color adjustment (and http://superuser.com/questions/563211 suspects the same).

Could you tell us what graphics hardware and which driver you are using?
Also, could you try turning off HWCursor in the device section of
xorg.conf and see if the problem still exists?

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https://bugs.launchpad.net/bugs/1096401

Title:
  redshift do not affect the mouse cursor

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