Public bug reported:

I built a new system and installed Ubuntu 12.10. The system has the
following specifications:

Samsung 840 Pro 128 GB 
Gigabyte P75-D3
Intel i7 3770
32 GB Ram
Western Digital 1 TB Black (mounted as /home)
Western Digital 3 TB Green (mounted as /media/data_drive)

The initial Ubuntu 12.10 install took almost 6 hours as transfer rates
were very slow. After reboot everything appeared very fast. However when
I did an "apt-get update" the download took 20 seconds and the
processing of lists took 19 minutes.

I had 12.10 installed on another computer which was working great (older
Althon system) so I installed the drive and tested the new machine. It
suffered the same performance problems.

I installed Windows 7 and performed speeds tests, it reported great
results.

I installed 12.04 onto the 1 TB drive and it did not suffer the same
performance problems. Everything ran great.

I then upgraded 12.10 to 13.04 (January 27, 2013) and it too suffered
from the performance issue.

It appears that a change between 12.04 to 12.10 impacts AHCI based
systems specifically running the Intel B75 chipset. I am not certain but
I think that either the motherboard is misrepresenting something (that
12.04 ignores but it impacts 12.10) or the kernel is not detecting the
system correctly.

I created a couple of pastebins with data collected:

12.10 Install: http://pastebin.ubuntu.com/1561660/
12.04 Live Disk (was checked against installed version and data is mostly the 
same): http://paste.ubuntu.com/1565140/

I have a thread on the ubuntu forums that may provide additional
details: http://ubuntuforums.org/showthread.php?t=2104709

I also started an e-mail thread to the ubuntu-users mailing list:
http://ubuntu.5.n6.nabble.com/Seeking-Help-td5010422.html

I have done a lot of troubleshooting and I feel that the problem must
either be the kernel or the bios misrepresenting information. In either
case I am stuck without any idea of where to go next with the debuging
and diagnoses path.

If any additional information needs to be collected, please let me know
and I will work to assist.

** Affects: linux (Ubuntu)
     Importance: Undecided
         Status: Incomplete

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https://bugs.launchpad.net/bugs/1107150

Title:
  B75 Chipset I/O Problems

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