I tried this with 3 upgradeable packages (epiphany-browser, epiphany-
browser-data, and gdebi-core) on Quantal.   Of the 3 only epiphany-
browser and epiphany-browser-data had 'Auto-Installed' changed from 1 to
0.

This was using aptdaemon version 0.45+bzr861-0ubuntu9.1.

** Also affects: aptdaemon (Ubuntu)
   Importance: Undecided
       Status: New

** Changed in: aptdaemon (Ubuntu)
       Status: New => Triaged

** Changed in: aptdaemon (Ubuntu)
   Importance: Undecided => High

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https://bugs.launchpad.net/bugs/1078544

Title:
  python-aptdaemon: upgrading marks auto-installed packages as manual

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