Hours later:

Still:
Ubuntu 12.04 LTS
AMD A6-3420M APU with Radeon(tm) HD Graphics × 4

$ sudo apt-get update
[sudo] password for peeter: 
Sorry, try again.
[sudo] password for peeter: 
Ign http://us.archive.ubuntu.com precise InRelease
Ign http://us.archive.ubuntu.com precise-updates InRelease
Ign http://security.ubuntu.com precise-security InRelease
Hit http://us.archive.ubuntu.com precise Release.gpg
Get:1 http://security.ubuntu.com precise-security Release.gpg [198 B]
Get:2 http://us.archive.ubuntu.com precise-updates Release.gpg [198 B]
Hit http://us.archive.ubuntu.com precise Release          
Hit http://security.ubuntu.com precise-security Release             
Hit http://us.archive.ubuntu.com precise-updates Release            
Ign http://us.archive.ubuntu.com precise Release
Err http://security.ubuntu.com precise-security Release
  
Err http://us.archive.ubuntu.com precise-updates Release
  
Ign http://us.archive.ubuntu.com precise/main amd64 Packages/DiffIndex
Ign http://us.archive.ubuntu.com precise/restricted amd64 Packages/DiffIndex
Ign http://us.archive.ubuntu.com precise/universe amd64 Packages/DiffIndex
Ign http://us.archive.ubuntu.com precise/multiverse amd64 Packages/DiffIndex
Ign http://us.archive.ubuntu.com precise/main i386 Packages/DiffIndex
Ign http://us.archive.ubuntu.com precise/restricted i386 Packages/DiffIndex
Ign http://us.archive.ubuntu.com precise/universe i386 Packages/DiffIndex
Ign http://us.archive.ubuntu.com precise/multiverse i386 Packages/DiffIndex
Get:3 http://us.archive.ubuntu.com precise/main TranslationIndex [3,706 B]
Get:4 http://us.archive.ubuntu.com precise/multiverse TranslationIndex [2,676 B]
Get:5 http://us.archive.ubuntu.com precise/restricted TranslationIndex [2,596 B]
Get:6 http://us.archive.ubuntu.com precise/universe TranslationIndex [2,922 B]
Get:7 http://us.archive.ubuntu.com precise/main amd64 Packages [1,273 kB]
Get:8 http://us.archive.ubuntu.com precise/restricted amd64 Packages [8,452 B]  
                                                                                
         
Get:9 http://us.archive.ubuntu.com precise/universe amd64 Packages [4,786 kB]   
                                                                                
         
Get:10 http://us.archive.ubuntu.com precise/multiverse amd64 Packages [119 kB]  
                                                                                
         
Get:11 http://us.archive.ubuntu.com precise/main i386 Packages [1,274 kB]       
                                                                                
         
Get:12 http://us.archive.ubuntu.com precise/restricted i386 Packages [8,431 B]  
                                                                                
         
Get:13 http://us.archive.ubuntu.com precise/universe i386 Packages [4,796 kB]   
                                                                                
         
Get:14 http://us.archive.ubuntu.com precise/multiverse i386 Packages [121 kB]   
                                                                                
         
Hit http://us.archive.ubuntu.com precise/main Translation-en                    
                                                                                
         
Hit http://us.archive.ubuntu.com precise/multiverse Translation-en              
                                                                                
         
Hit http://us.archive.ubuntu.com precise/restricted Translation-en              
                                                                                
         
Hit http://us.archive.ubuntu.com precise/universe Translation-en                
                                                                                
         
Fetched 12.4 MB in 2min 1s (102 kB/s)                                           
                                                                                
         
Reading package lists... Error!
W: GPG error: http://us.archive.ubuntu.com precise Release: The following 
signatures were invalid: BADSIG 40976EAF437D05B5 Ubuntu Archive Automatic 
Signing Key <ftpmas...@ubuntu.com>
W: A error occurred during the signature verification. The repository is not 
updated and the previous index files will be used. GPG error: 
http://security.ubuntu.com precise-security Release: The following signatures 
were invalid: BADSIG 40976EAF437D05B5 Ubuntu Archive Automatic Signing Key 
<ftpmas...@ubuntu.com>

W: A error occurred during the signature verification. The repository is
not updated and the previous index files will be used. GPG error:
http://us.archive.ubuntu.com precise-updates Release: The following
signatures were invalid: BADSIG 40976EAF437D05B5 Ubuntu Archive
Automatic Signing Key <ftpmas...@ubuntu.com>

W: Failed to fetch http://security.ubuntu.com/ubuntu/dists/precise-
security/Release

W: Failed to fetch http://us.archive.ubuntu.com/ubuntu/dists/precise-
updates/Release

W: Some index files failed to download. They have been ignored, or old ones 
used instead.
E: Encountered a section with no Package: header
E: Problem with MergeList 
/var/lib/apt/lists/us.archive.ubuntu.com_ubuntu_dists_precise-updates_restricted_binary-amd64_Packages
E: The package lists or status file could not be parsed or opened.

-- 
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https://bugs.launchpad.net/bugs/755908

Title:
  Fail to update certain packages....

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