I found the following link on the net,  
"http://forums.linuxmint.com/viewtopic.php?f=42&t=44862";   tried what was 
suggested there and it sounds better.
Some value adjustments to daemon.config(etc/pulse) file

default-sample-format = s16le
default-sample-rate = 44100
; alternate-sample-rate = 48000
default-sample-channels = 2
; default-channel-map = front-left,front-right

default-fragments = 32
default-fragment-size-msec = 50

I hope that this will help to give a better perspective on the problem.
Failing that, will it be safe to remove PulseAdio completely and run with Alsa 
only, I am on UbuntuStudio and are scared it will break "Jack". Any suggestions?

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https://bugs.launchpad.net/bugs/1063965

Title:
  Choppy sound in 12.10

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