My bug report was marked as a duplicate of this one.  I cannot see the
reference to it here so I post my bug report here since it contains the
likely cause of your problem.


Binary package hint: x11-common

Hi,

dexconf overwrites xorg.conf without making a backup and without
creating a backup copy when called with root privileges from the
console. This can lead to data loss.

Regards

Rolf

-- 
custom xorg.conf should not be overridden
https://launchpad.net/bugs/57776

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