I'm sorry, but my previous statement wasn't completely accurate.

I had only checked that group was mounted, but when I tried to start a
container it failed. It really only started working after I restarted
cgroup-lite after a reboot.

For now I added this to /etc/rc.local before the exit 0 to workaround
the issue, even with group-lite 1.1.1:

/etc/init.d/cgroup-lite restart

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https://bugs.launchpad.net/bugs/989354

Title:
  cgroup-lite and separated /usr

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