As a workaround, I modified my
/usr/share/applications/netbeans-7.1.1.desktop file and added this line:

StartupWMClass=NetBeans IDE 7.1.1

and now unity matches the running netbeans with the launcher icon. I
used CCSM / Window Management to grab the WM Class.

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https://bugs.launchpad.net/bugs/754334

Title:
  unity launcher does not retain netbeans application

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