This is not solved in precise. I had this problem in 11.10, installed
12.04 from scratch and the problem did not appear at first. But today I
notice this exact problem on both my laptop and my desktop.

I can still use right-click menu not only to close the app, but also to
"install all updates". This option works now (not sure if it was
before), but the update manager's main window never shows up anyway, we
really need to close and reopen update manager for it to show up, the
icons stays in the tray unclickable.

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https://bugs.launchpad.net/bugs/877444

Title:
  launcher does not show minimized update manager while clicked

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