Curious that synaptic tells me appmenu-gtk related to dbus and I find 
/usr/bin/aptd
daemon (dbus related apparently) is crashing.   And with appmenu-gtk present, 
yes
a resize fixed the problem in boinc manager.  Newly installed 12.04 today.

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https://bugs.launchpad.net/bugs/886699

Title:
  Black box at top left of boinc manager window

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