the dependence on kernel version suggests a kernel issue.

could you post /etc/fstab and the output of 
mount
from both the 2.6.20-15 and 2.6.20-16 kernels

** Changed in: linux-source-2.6.20 (Ubuntu)
Sourcepackagename: None => linux-source-2.6.20
       Status: Unconfirmed => Needs Info

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grub-install is no work
https://bugs.launchpad.net/bugs/118285
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