In my view this fix introduces a bug.

I appreciate that it is preferable that configure does not alter the
files under version control, but the consequence is that using
./configure --prefix to install byobu to an arbitrary location now
creates an install which does not work out of the box; instead I must
set BYOBU_PREFIX to be the installed location in my shell.  This is a
pain and somewhat of a surprise considering the previous behaviour of
the install process.

It is entirely reasonable to expect some changes to arise in the shell
scripts if you install it to a non-standard location, so minimising the
diff against upstream (and comparing diffs is surely a rare activity
relative to running byobu) is not a great concern.

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https://bugs.launchpad.net/bugs/861291

Title:
  "configure" should not change files which are under VCS control

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