Public bug reported:

Executed xrandr --output $display --rotate left
Screen rotated properly, touchscreen coordinate system did not rotate with 
display.

output from xrandr --verbose [displaying only Cando config]

Screen 0: minimum 320 x 200, current 1366 x 768, maximum 8192 x 8192
LVDS1 connected 1366x768+0+0 (0x47) normal (normal left inverted right x axis y 
axis) 256mm x 144mm
        Identifier: 0x41
        Timestamp:  4098802
        Subpixel:   horizontal rgb
        Gamma:      1.0:1.0:1.0
        Brightness: 1.0
        Clones:    
        CRTC:       0
        CRTCs:      0 1
        Transform:  1.000000 0.000000 0.000000
                    0.000000 1.000000 0.000000
                    0.000000 0.000000 1.000000
                   filter: 
        EDID:
                00ffffffffffff0030e4bf0200000000
                00140103801a0e780a05959559568c28
                20505400000001010101010101010101
                0101010101011c1b5684500007301214
                130000901000001b0000000000000000
                00000000000000000000000000fe004c
                4720446973706c61790a2020000000fe
                004c503131365748322d544c4e3100dd
        BACKLIGHT: 4 (0x00000004)       range:  (0,9)
        Backlight: 4 (0x00000004)       range:  (0,9)
        scaling mode:   Full aspect
                supported: None         Full         Center       Full aspect 
  1366x768 (0x47)   69.4MHz +HSync -VSync *current +preferred
        h: width  1366 start 1384 end 1404 total 1498 skew    0 clock   46.3KHz
        v: height  768 start  769 end  772 total  775           clock   59.8Hz
  1360x768 (0x48)   84.8MHz -HSync +VSync
        h: width  1360 start 1432 end 1568 total 1776 skew    0 clock   47.7KHz
        v: height  768 start  771 end  781 total  798           clock   59.8Hz
  1360x768 (0x49)   72.0MHz +HSync -VSync
        h: width  1360 start 1408 end 1440 total 1520 skew    0 clock   47.4KHz
        v: height  768 start  771 end  781 total  790           clock   60.0Hz
  1024x768 (0x4a)   65.0MHz -HSync -VSync
        h: width  1024 start 1048 end 1184 total 1344 skew    0 clock   48.4KHz
        v: height  768 start  771 end  777 total  806           clock   60.0Hz
  800x600 (0x4b)   40.0MHz +HSync +VSync
        h: width   800 start  840 end  968 total 1056 skew    0 clock   37.9KHz
        v: height  600 start  601 end  605 total  628           clock   60.3Hz
  800x600 (0x4c)   36.0MHz +HSync +VSync
        h: width   800 start  824 end  896 total 1024 skew    0 clock   35.2KHz
        v: height  600 start  601 end  603 total  625           clock   56.2Hz
  640x480 (0x4d)   25.2MHz -HSync -VSync
        h: width   640 start  656 end  752 total  800 skew    0 clock   31.5KHz
        v: height  480 start  490 end  492 total  525           clock   59.9Hz

** Affects: linux (Ubuntu)
     Importance: Undecided
         Status: Incomplete

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https://bugs.launchpad.net/bugs/882866

Title:
  Gigabyte T1125N Cando Touchscreen Rotation Coordinate Fail

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