You're right... that's in my dmesg too, didn't notice it yet:

[    2.308019] ata3: SATA link up 3.0 Gbps (SStatus 123 SControl 300)
[    2.323626] ata3.00: HPA detected: current 625140335, native 625142448
[    2.323778] ata3.00: ATA-7: Hitachi HDT725032VLA360, V54OA7EA, max UDMA/133
[    2.323782] ata3.00: 625140335 sectors, multi 0: LBA48 NCQ (depth 31/32), AA
[    2.324743] ata3.00: configured for UDMA/133
[    2.324831] scsi 2:0:0:0: Direct-Access     ATA      Hitachi HDT72503 V54O 
PQ: 0 ANSI: 5
[    2.324965] sd 2:0:0:0: [sdc] 625140335 512-byte logical blocks: (320 GB/298 
GiB)
[    2.325009] sd 2:0:0:0: Attached scsi generic sg2 type 0
What does this mean? And why is it only sometimes and why is there a
"HPA" when I never configured it but formatted the whole drive?

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https://bugs.launchpad.net/bugs/875986

Title:
  Hard disk incorrectly reported to have less sectors than it really has
  [HPA?]

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