adding skype to systray whitelist solve the issue

giovanni@whale:~$ gsettings get com.canonical.Unity.Panel systray-whitelist
['JavaEmbeddedFrame', 'Wine', 'scp-dbus-service', 'Update-notifier', 'Skype']
giovanni@whale:~$

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https://bugs.launchpad.net/bugs/854448

Title:
  Skype should depend on sni-qt (multiarch)

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