Well I found an answer, well at least it works for Starcraft2, maybe it
will work for other Wine apps. Right click on the desktop and select:
Change Desktop Background, then select the Visual Effects tab, then
select None.
That turns off visual effects (like Compiz) and makes the mouse pointer
offset disappear. I hope this helps.

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https://bugs.launchpad.net/bugs/755406

Title:
  Mouse offset problem when using a WINE application maximized

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