And here's my .xprofile in case it's of any interest.

** Attachment added: ".xprofile"
   
https://bugs.launchpad.net/ubuntu/+source/unity/+bug/762343/+attachment/2044606/+files/.xprofile

** Description changed:

  Binary package hint: unity
  
  [Problem]
  Windows can be placed on screen in ways that inhibit being able to move them, 
such as by launching them in a .xprofile.
  
  [Steps to reproduce]
  Create a ~/.xprofile that launches some gnome-terminal sessions with 
specified geometries:
  
-   gnome-terminal --geometry=103x29+0+0 &
-   gnome-terminal --geometry=115x20+1920+25 &
+   gnome-terminal --geometry=103x29+0+0 &
+   gnome-terminal --geometry=115x20+1920+25 &
  
  etc.
  
  On boot, I find that the windows are not always positioned where I
  intended them (annoying but a lesser issue), and that sometimes they're
  placed such that the titlebar overlays the main menu bar at the top of
  the screen.  When this happens, I can no longer drag the window by
  clicking on the window's titlebar, even though I can see it.  (see
  photo).
+ 
+ The workaround I used was to Alt+Click on the window itself and drag, so
+ this isn't a huge issue.  And I can't seem to launch new gnome-terminal
+ sessions into the incorrect position once unity is up and running, so
+ this is probably a pretty small corner case.  Still annoying though...
  
  ProblemType: Bug
  DistroRelease: Ubuntu 11.04
  Package: unity 3.8.8-0ubuntu2
  ProcVersionSignature: Ubuntu 2.6.38-8.42-generic-pae 2.6.38.2
  Uname: Linux 2.6.38-8-generic-pae i686
  Architecture: i386
  CompizPlugins: 
[core,bailer,detection,composite,opengl,decor,mousepoll,vpswitch,regex,animation,snap,expo,move,compiztoolbox,place,grid,gnomecompat,wall,ezoom,workarounds,staticswitcher,resize,fade,scale,session,unityshell]
  Date: Fri Apr 15 17:17:35 2011
  InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Alpha i386 (20110202)
  ProcEnviron:
-  LANGUAGE=en_US:en
-  PATH=(custom, user)
-  LANG=C
-  SHELL=/bin/bash
+  LANGUAGE=en_US:en
+  PATH=(custom, user)
+  LANG=C
+  SHELL=/bin/bash
  SourcePackage: unity
  UpgradeStatus: Upgraded to natty on 2011-04-04 (11 days ago)

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https://bugs.launchpad.net/bugs/762343

Title:
  Can't drag window by titlebar if launched from .xprofile

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