Oh wait, you merged an old patch!
You should have taken the patch Mario did on bazaar that's linked to this bug,
that's the patch I mention in comment #2.
http://bazaar.launchpad.net/~mythbuntu-dev/lirc/ubuntu/revision/151
** Changed in: lirc (Ubuntu)
Status: Fix Released => Incomplete
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https://bugs.launchpad.net/bugs/698208
Title:
lirc init script doesn't disable other methods on natty
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