Update:
After a bit of research I have confirmed that this bug is not related to 
Ubuntu, but to most new ditros running the 2.6.20 kernel.
As I suspected the problem is related to the HP bios which is 'a bit 
problematic' when it comes to linux.
Anyway when I have updated the bios from F.06 to F.0B [newest at this time] the 
problem ceased to occur and the laptop is able to shutdown or reboot properly.
My suggestion is to put this in the official Faisty documentation as HP NX6310 
bug and strongly suggest preforming the update before installing Faisty. If the 
update is preformed after faisty is installed, the system have trouble setting 
up the system clock, and the boot up takes about 10 sec longer then usual.
Cheers

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Faisty H5 cannot reboot on HP NX6310
https://bugs.launchpad.net/bugs/93779
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