I think I have found the problem with my installation. /var/lib/mysql is
a link to a location on an iscsi target. I am fairly certain the iscsi
targets were not connected, because eth1, my iscsi interface wasn't
brought up. eth1 didn't come up when I rebooted after the upgrade, Now
eth1 and iscsi are fine, and I updated mysql successfully.

I'd consider this a non-issue at this point.

Thank you.
tjk :)

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mysql failed to configure while upgrading to 10.04
https://bugs.launchpad.net/bugs/657385
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