Almost exactly the same errors:
..........
[akonadiserver] /usr/bin/mysqlcheck: Got error: 2002: Can't connect to local 
MySQL server through socket 
'/home/lmpam/.local/share/akonadi/db_misc/mysql.socket' (2) when trying to 
connect
[akonadiserver] FATAL ERROR: Upgrade failed ............. Then repeats several 
time before aborting.

Linux Mint 9 Isadora, 
Linux 2.6.32.21.22-generic (i686)
Desktop Environment: GNOME 2.30.2
akonadi-server: 1.3.1-0ubuntu3 (lucid)
mysql-server-core-5.1: 5.1.41-3ubuntu12.6 (lucid)
kontact & kmail: 4:4.4.2-0ubuntu5 (lucid)

-- 
MySql log file problem prevents Akonadi startup
https://bugs.launchpad.net/bugs/578357
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