I can confirm that I observed a similar behavior like Lorenz. In
addition in both the times when this error occurred , samba and winbind
were the packages where update manager seems to be stuck.  There were
also a message that /var/cache/debconf/config.dat was locked. I have to
finally kill the process but I am now stuck with some broken packages.

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update-apt-xapian-index crashed with DatabaseLockError in __init__()
https://bugs.launchpad.net/bugs/590998
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