Ok, this doesn't work:
sudo mount /dev/mapper/loop0p1 /mnt; sudo cp -a /mnt2/* /mnt; sudo umount /mnt

but this does:
sudo mount /dev/mapper/loop0p1 /mnt; sudo rm /mnt/*; sudo cp -a /mnt2/* /mnt; 
sudo umount /mnt

The files are created by mcopy, so I suspect it's the true culprit.

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Doesn't allow forcing file systems to 255 heads
https://bugs.launchpad.net/bugs/615873
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