No answer for more than 3 months, unsure problem (I don't think it's because of Ubuntu as it doesn't have any write capability for NTFS by default). If you have more information to give feel free to reopen. Thank you
** Changed in: grub (Ubuntu)
Status: Unconfirmed => Rejected
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Ubuntu 6.10 corrupts Windows XP registry
https://launchpad.net/bugs/72677
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