I had this problem too, and I found that checking ~/.xsession-errors
showed that vino-server was restarting very, very often.  Killing it cut
my wakeups from the load balancing tick dramatically.  I read on the
Ubuntu forums that someone had a similar situation with Metacity, so I
would suggest checking that log.

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Tens of wakes per second in "[kernel scheduler] Load balancing tick" on Core 2 
Duo even with only 1 core enabled
https://bugs.launchpad.net/bugs/524281
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