Something similar happens to me. I used to sync HTC Raphael (WM 6.1)
with Ubuntu Jaunty and Karmic (amd64) without problems. After a clean
upgrade to Lucid (/home partition left intact), using both msynctool0.90
and 0.92svn, I get constant crashes:

dmesg:
msynctool[2785]: segfault at 0 ip 00007f4f99ddc53a sp 00007f4f8a70b908 error 4 
in libc-2.11.1.so[7f4f99d5b000+178000]

$ msynctool --sync synce-sync
Synchronizing group "synce-sync" 
The previous synchronization was unclean. Slow-syncing
DEBUG:SynCE:Connect() called
Member 1 of type synce-opensync-plugin just connected
Member 2 of type evo2-sync just connected
All clients connected or error
DEBUG:SynCE:get_changeinfo() called
DEBUG:SynCE:slow sync requested for Contacts
DEBUG:SynCE:slow sync requested for Calendar
DEBUG:SynCE:slow sync requested for Tasks
INFO:SynCE:initiating device synchronization
INFO:SynCE:waiting for engine to complete sync
Received an entry pas-id-49C60C1A00000457 with data of size 8 from member 2 
(evo2-sync). Changetype ADDED
......(many entries)
Received an entry pas-id-49C60C1B0000049B with data of size 176 from member 1 
(synce-opensync-plugin). Changetype ADDED
Member 1 of type synce-opensync-plugin just sent all changes
All clients sent changes or error
Pipe closed! Exiting.
Pipe closed! Exiting.
Segmentation fault

-- 
msynctool crashed with SIGSEGV in osync_time_dstchange()
https://bugs.launchpad.net/bugs/534134
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