If you do not have a BIOS option for this, you can try this:

  echo "blacklist floppy" | sudo tee /etc/modprobe.d/blacklist-floppy.conf
  sudo update-initramfs -u

does that help after a reboot?

It'd still help if  someone who is affected could provide me access to
the box, via ssh or empathy remote desktop (pi...@jabber.org).

-- 
Attempts to mount floppy despite no media present - disable automount
https://bugs.launchpad.net/bugs/539515
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