gnome-session only stops the processes that it knows about (ie, clients
that register with it via XSMP or D-Bus), and it negotiates the shutdown
of these processes via the session protocol. It doesn't kill them at
all.

gnome-session doesn't touch the processes that didn't register with it
(which I assume are the ones you have a problem with) - these processes
likely just die when the X server goes away

** Changed in: gnome-session (Ubuntu)
       Status: New => Invalid

-- 
Shutdown SIGKILLs processes
https://bugs.launchpad.net/bugs/534210
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