Trie3d a fresh 10.04 installation on another machine, with ext4 for /
and /home but no problems on the motherboard SATA connected HDD.
I am now wondering if it is related to the ARC-1200 2-Port PCI-Express
to SATA II RAID Controller (appears as SCSI disk device), unfortunately
I don't currently have a spare card to set up a simple clean install to
test this.

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file system not clean after reboot
https://bugs.launchpad.net/bugs/580059
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