I think the karmic package is *not* affected:
~/Desktop/sun-java6-bin_6.20dlj-0ubuntu1.9.10_amd64/data$ cat
./usr/share/applications/sun-java6-java.desktop
[Desktop Entry]
Encoding=UTF-8
Name=Sun Java 6 Runtime
Comment=Sun Java 6 Runtime
Exec=/usr/lib/jvm/java-6-sun-1.6.0.20/bin/java -jar
Terminal=false
Type=Application
Icon=sun-java6
MimeType=application/x-java-archive;application/java-archive;application/x-jar;
NoDisplay=true
** Changed in: sun-java6 (Ubuntu)
Status: New => Fix Released
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Cannot open .jar with right-click > open with "sun java 6 runtime"
https://bugs.launchpad.net/bugs/568707
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